Alejandro Martínez León
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Python
🐒 Monkey Patching with Context Managers — Python Clean Hack
Sometimes you need to override the behavior of a library function temporarily—maybe to fix a bug, tweak behavior, or experiment—without editing its source code.
Last updated on Aug 6, 2025
2 min read
Boosting reproducibility, compatibility and scalability with Snakemake
A simple example of how to use Snakemake to parallelize a typical workflow
Last updated on Jun 21, 2024
1 min read
CHARMM to GMX
Getting TOP and GRO from CHARMM files using ParmED
Last updated on Mar 26, 2024
1 min read
TOFF
Topology for small molecules
GitHub
Documentation
moldrug
A Profile-Restrained Chemical Space Navigator for Drug Design and Other Adventures.
GitHub
Documentation
Paper
moldrug-Dashboard
A friendly app to analyze moldrug solutions.
App
GitHub
Documentation
StreamJSME
Streamlit component that use JSME to draw 2D molecules and use them on your Streamlit app
App
GitHub
Palmiche
My PhD friend ☺️
GitHub
Documentation
aleimi
Conformational search of small molecules
GitHub
Documentation
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